6OBD
Crystal structure of anti-GLD52 Fab complex with human GLD52 peptide mimetic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-08-04 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5419 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.400, 131.200, 133.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.530 - 2.200 |
R-factor | 0.2372 |
Rwork | 0.234 |
R-free | 0.30680 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.019 |
RMSD bond angle | 1.848 |
Data reduction software | HKL-2000 |
Data scaling software | d*TREK |
Phasing software | BALBES |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.530 | 30.530 | 2.280 |
High resolution limit [Å] | 2.200 | 4.730 | 2.200 |
Rmerge | 0.054 | 0.039 | 0.216 |
Rmeas | 0.063 | 0.045 | 0.293 |
Total number of observations | 149992 | ||
Number of reflections | 47509 | 5193 | 4167 |
<I/σ(I)> | 12.9 | 23.6 | 2.8 |
Completeness [%] | 95.9 | 99.3 | 84.9 |
Redundancy | 3.13 | 3.87 | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5.8 | 294 | 0.05M zinc acetate, 17% PEG3350, 0.1M MES pH 5.8 |