6O53
Structure of HLA-A2:01 with peptide MM96
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-04 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 56.247, 79.638, 57.227 |
Unit cell angles | 90.00, 116.12, 90.00 |
Refinement procedure
Resolution | 31.490 - 1.400 |
R-factor | 0.1897 |
Rwork | 0.189 |
R-free | 0.20960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5enw |
RMSD bond length | 0.005 |
RMSD bond angle | 1.241 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.420 |
High resolution limit [Å] | 1.400 | 3.800 | 1.400 |
Rmerge | 0.055 | 0.053 | 0.417 |
Rmeas | 0.068 | 0.067 | 0.530 |
Rpim | 0.039 | 0.039 | 0.323 |
Number of reflections | 85391 | 4267 | 4213 |
<I/σ(I)> | 12 | ||
Completeness [%] | 96.5 | 94.3 | 95.5 |
Redundancy | 2.8 | 2.8 | 2.3 |
CC(1/2) | 0.990 | 0.791 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 295.15 | 30% PEG 4000, 0.1M TRIS-HCL PH 8.5, 0.2M LITHIUM SULFATE |