6O0A
Crystal structure of flavohemoglobin from Malassezia yamatoensis with bound FAD and heme determined by iron SAD phasing
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-01-16 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 91.010, 110.600, 39.010 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.260 - 1.700 |
R-factor | 0.1688 |
Rwork | 0.167 |
R-free | 0.19770 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.260 | 47.260 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.057 | 0.038 | 0.546 |
Rmeas | 0.060 | 0.040 | 0.618 |
Total number of observations | 795009 | ||
Number of reflections | 44250 | 933 | 6074 |
<I/σ(I)> | 24.66 | 79.98 | 2.46 |
Completeness [%] | 99.9 | 99.8 | 98.8 |
Redundancy | 9.509 | 14.779 | 4.405 |
CC(1/2) | 0.999 | 1.000 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | 19.93 mg/mL MayaA.00765.a.TH11.PD38344, 1:1 with Morpheus(b12) (12.5% w/v PEG1000, 12.5% w/v PEG3350, 12.5% MPD, 0.03 M sodium fluoride, 0.03 M sodium bromide, 0.03 M sodium iodide, 0.1 M bicine/Trizma base, pH 8.5), tray: 306177b12, puck: swh5-1 |