6NY8
Crystal structure of computationally designed protein XAA_GVDQ with calcium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.1111 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 86.158, 49.602, 85.032 |
Unit cell angles | 90.00, 109.71, 90.00 |
Refinement procedure
Resolution | 80.049 - 2.300 |
R-factor | 0.289 |
Rwork | 0.287 |
R-free | 0.30410 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((dev_2849: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.050 | 2.040 |
High resolution limit [Å] | 1.970 | 1.970 |
Rmerge | 0.049 | 6.110 |
Rmeas | 0.054 | 6.727 |
Rpim | 0.021 | 2.751 |
Number of reflections | 23465 | 2125 |
<I/σ(I)> | 12.8 | 0.3 |
Completeness [%] | 97.9 | 89.55 |
Redundancy | 6.5 | |
CC(1/2) | 0.255 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291.15 | 0.05 M calcium acetate, 0.1 M sodium acetate pH 4.5, 40% (w/v) 1,2-propanediol |