6NXI
Flavin Transferase ApbE from Vibrio cholerae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-24 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.121, 70.957, 106.813 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.700 - 1.610 |
R-factor | 0.1745 |
Rwork | 0.172 |
R-free | 0.21390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pnd |
RMSD bond length | 0.011 |
RMSD bond angle | 1.697 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.700 | 42.700 | 1.650 |
High resolution limit [Å] | 1.610 | 4.400 | 1.610 |
Rmerge | 0.097 | 0.073 | 0.693 |
Rmeas | 0.104 | 0.078 | 0.758 |
Rpim | 0.037 | 0.028 | 0.299 |
Number of reflections | 38465 | 2128 | 1667 |
<I/σ(I)> | 7.3 | 1.74 | |
Completeness [%] | 98.9 | 99.7 | 88.1 |
Redundancy | 7.7 | 7.5 | 6.1 |
CC(1/2) | 0.985 | 0.995 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 289 | 0.1 M sodium acetate, 25% PEG 4000, 8% isopropanol |