6NVP
Crystal structure of Pseudomonas putida nuclease MPE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.7712 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 45.394, 45.394, 317.403 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.312 - 2.000 |
R-factor | 0.1974 |
Rwork | 0.192 |
R-free | 0.24340 |
Structure solution method | SIRAS |
RMSD bond length | 0.007 |
RMSD bond angle | 0.823 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SHELXCD |
Refinement software | PHENIX ((1.14_3211: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rpim | 0.031 | 0.345 |
Number of reflections | 14173 | |
<I/σ(I)> | 28.1 | 2 |
Completeness [%] | 98.3 | 91.5 |
Redundancy | 4.3 | 2.4 |
CC(1/2) | 0.995 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | 0.1 mM Tris-HCl pH 7.4, 20% PEG MME 2000, 5mM MnCl2 |