6NVA
Crystal structure of Escherichia coli dihydrodipicolinate synthase and propionate covalently bound to K161.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-15 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 86.140, 86.333, 107.002 |
Unit cell angles | 109.72, 104.24, 99.18 |
Refinement procedure
Resolution | 25.173 - 2.160 |
R-factor | 0.184 |
Rwork | 0.183 |
R-free | 0.23880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t26 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.933 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.200 |
High resolution limit [Å] | 2.160 | 2.160 |
Rmerge | 0.149 | 0.756 |
Number of reflections | 142605 | 6709 |
<I/σ(I)> | 7.781 | |
Completeness [%] | 97.6 | 92 |
Redundancy | 3.2 | 2 |
CC(1/2) | 0.524 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 20% PEG 3350 8 mM spermidine 200 mM sodium tartrate 8 mM 2-bromopropionic acid pH 7.5 |