6NR6
Crystal Structure of Staphylococcus pseudintermedius SbnI in complex with ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97896 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 101.644, 73.074, 88.372 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.811 - 1.900 |
R-factor | 0.2088 |
Rwork | 0.207 |
R-free | 0.24210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ujd |
RMSD bond length | 0.006 |
RMSD bond angle | 0.739 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.811 | 37.810 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.046 | 0.026 | 0.867 |
Rmeas | 0.050 | 0.029 | 0.943 |
Rpim | 0.019 | 0.012 | 0.367 |
Number of reflections | 52452 | 553 | 3204 |
<I/σ(I)> | 17.7 | ||
Completeness [%] | 99.7 | 98.7 | 96.1 |
Redundancy | 6.6 | 6 | 6.3 |
CC(1/2) | 0.999 | 0.995 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 0.16 M calcium acetate, 0.1 M imidazole (pH 8), 8% (v/v) PEG 8000 |