6NQM
Crystal structure of Human LSD1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-02-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 189.401, 189.401, 107.104 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.890 - 2.900 |
R-factor | 0.2141 |
Rwork | 0.212 |
R-free | 0.24450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hko |
RMSD bond length | 0.004 |
RMSD bond angle | 0.709 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.890 | 3.080 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmeas | 0.244 | |
Rpim | 0.054 | |
Number of reflections | 25582 | |
<I/σ(I)> | 11.9 | 4.5 |
Completeness [%] | 99.9 | 100 |
Redundancy | 38 | |
CC(1/2) | 0.999 | 0.551 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 296 | PEG 3350 8%, 0.1 M Ammonium citrate pH6.5 |