6NPX
Xanthomonas citri Dephospho-PGM in complex with mannose-6-phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-01-31 |
Detector | RDI CMOS_8M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.693, 54.334, 170.625 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.288 - 1.420 |
R-factor | 0.1875 |
Rwork | 0.185 |
R-free | 0.23230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bmn |
RMSD bond length | 0.006 |
RMSD bond angle | 0.897 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.830 | 1.450 |
High resolution limit [Å] | 1.420 | 1.420 |
Rmerge | 0.106 | 2.034 |
Rmeas | 0.115 | 2.281 |
Rpim | 0.045 | 1.005 |
Number of reflections | 60987 | 3892 |
<I/σ(I)> | 12.6 | 0.7 |
Completeness [%] | 78.3 | 99.7 |
Redundancy | 6.6 | 4.9 |
CC(1/2) | 0.998 | 0.488 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 292 | 22% PEG 8000, 0.2M MgCl, 0.1M HEPES |