6NP5
AAC-VIa bound to Kanamycin B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-13 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 86.746, 86.429, 50.119 |
Unit cell angles | 90.00, 119.75, 90.00 |
Refinement procedure
Resolution | 43.214 - 1.353 |
R-factor | 0.1224 |
Rwork | 0.121 |
R-free | 0.13950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bc6 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.380 |
High resolution limit [Å] | 1.350 | 3.330 | 1.350 |
Rmerge | 0.055 | 0.054 | 0.149 |
Rmeas | 0.067 | 0.066 | 0.187 |
Rpim | 0.037 | 0.037 | 0.111 |
Total number of observations | 225392 | ||
Number of reflections | 70419 | 4646 | 4323 |
<I/σ(I)> | 14.4 | ||
Completeness [%] | 98.9 | 96.3 | 91.4 |
Redundancy | 3.2 | 3.2 | 2.5 |
CC(1/2) | 0.989 | 0.956 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 279 | 15-20% polyethylene glycol (PEG) 8000,0.1 M Tris, pH=8.5 and 0.3 M MgCl2 |