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6NP5

AAC-VIa bound to Kanamycin B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-13
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1
Spacegroup nameC 1 2 1
Unit cell lengths86.746, 86.429, 50.119
Unit cell angles90.00, 119.75, 90.00
Refinement procedure
Resolution43.214 - 1.353
R-factor0.1224
Rwork0.121
R-free0.13950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6bc6
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.380
High resolution limit [Å]1.3503.3301.350
Rmerge0.0550.0540.149
Rmeas0.0670.0660.187
Rpim0.0370.0370.111
Total number of observations225392
Number of reflections7041946464323
<I/σ(I)>14.4
Completeness [%]98.996.391.4
Redundancy3.23.22.5
CC(1/2)0.9890.956
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP27915-20% polyethylene glycol (PEG) 8000,0.1 M Tris, pH=8.5 and 0.3 M MgCl2

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PDB entries from 2024-11-13

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