6NOB
Structure of Glycoside Hydrolase family 32 from Bifidobacterium adolescentis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-06 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.45866 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 130.903, 130.903, 132.937 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 52.140 - 2.440 |
R-factor | 0.1783 |
Rwork | 0.177 |
R-free | 0.20980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1uyp |
RMSD bond length | 0.002 |
RMSD bond angle | 0.574 |
Data reduction software | TRUNCATE |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.340 | 2.500 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.282 | 3.425 |
Rmeas | 0.298 | 3.670 |
Rpim | 0.926 | |
Number of reflections | 49401 | 54042 |
<I/σ(I)> | 9.9 | 1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 18.4 | 15.1 |
CC(1/2) | 0.996 | 0.669 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291.15 | PEG 8K 25% (w/v), MES 0.1M pH 6.5 |