6NM6
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to N6 FR3-03 scFv in Complex with Crystallization Chaperones 3H109L Fab and 35O22 scFv at 3.2 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-20 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 63 |
Unit cell lengths | 128.240, 128.240, 315.770 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.020 - 2.739 |
R-factor | 0.2421 |
Rwork | 0.240 |
R-free | 0.28790 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.061 | 0.040 | |
Rmeas | 0.074 | 0.048 | |
Rpim | 0.042 | 0.026 | |
Total number of observations | 123992 | ||
Number of reflections | 43397 | 3800 | 6 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 54.2 | 93 | 0.1 |
Redundancy | 2.9 | 2.9 | 1 |
CC(1/2) | 0.991 | 0.820 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 60 mM acetate pH 4.5, 420 mM sodium formate, 5% PEG 3,350 and 60 mM CaCl2 |