6NKT
Ternary complex crystal structure of K289M variant of DNA polymerase Beta with beta-gamma difluoro analogue of dGTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-25 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.330, 79.669, 54.673 |
Unit cell angles | 90.00, 106.36, 90.00 |
Refinement procedure
Resolution | 31.862 - 2.600 |
R-factor | 0.2093 |
Rwork | 0.199 |
R-free | 0.30270 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.317 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.092 | 0.040 | 0.792 |
Total number of observations | 52986 | ||
Number of reflections | 14381 | 747 | 704 |
<I/σ(I)> | 8.2 | ||
Completeness [%] | 99.7 | 99.1 | 97.4 |
Redundancy | 3.7 | 3.6 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 16-18% PEG 3350, 50 mM Imidazole, 350 mM Sodium Acetate |