6NJY
Type IV CRISPR associated RNA endonuclease Cas6 - apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 193 |
Detector technology | PIXEL |
Collection date | 2018-02-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.55, 1.0718 |
Spacegroup name | P 61 |
Unit cell lengths | 85.541, 85.541, 142.587 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.004 - 1.760 |
R-factor | 0.1682 |
Rwork | 0.167 |
R-free | 0.19780 |
Structure solution method | SAD |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.004 | 40.000 | 1.820 |
High resolution limit [Å] | 1.760 | 3.790 | 1.760 |
Rmerge | 0.053 | 0.040 | 0.727 |
Rmeas | 0.058 | 0.044 | 0.822 |
Rpim | 0.023 | 0.017 | 0.376 |
Number of reflections | 58149 | 5922 | 5618 |
<I/σ(I)> | 18.1 | ||
Completeness [%] | 99.6 | 99.9 | 96.3 |
Redundancy | 6 | 6.6 | 4.2 |
CC(1/2) | 0.996 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | Mother Liquor = 0.1 M sodium acetate trihydrate (pH 5.0) and 1.75M ammonium sulfate. 6-8 mg/ml of protein purified in 100 mM HEPES pH 7.5, 150 mM KCl, 5% glycerol, 1mM TCEP, was mixed in equal volumes (2 microliters of each) on a sitting drop pedestal with ~500 mL of mother liquor in reservoir. |