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6NIE

BesD with Fe(II), chloride, and alpha-ketoglutarate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]194
Detector technologyPIXEL
Collection date2018-05-20
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.11
Spacegroup nameP 1
Unit cell lengths61.358, 68.916, 79.702
Unit cell angles115.36, 91.57, 112.95
Refinement procedure
Resolution70.027 - 1.950
R-factor0.1791
Rwork0.177
R-free0.21590
Structure solution methodSAD
RMSD bond length0.010
RMSD bond angle0.982
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareCRANK2
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.0302.020
High resolution limit [Å]1.9501.950
Number of reflections1499157341
<I/σ(I)>10.7
Completeness [%]97.395.7
Redundancy13.6
CC(1/2)0.9980.780
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2771:1 volume of protein solution (10 mg/mL BesD, lysine (1.5 mM), alpha-ketoglutarate (3 mM, pH 7)) and reservoir solution (MES pH 6.5 (100 mM), sodium chloride (0.6 mM), containing 20% (v/v) PEG 4000. Soaked anaerobically in a solution containing (NH4)2Fe(SO4)2 * 6H2O (1mM), alpha-ketoglutarate (1 mM), sodium ascorbate (1 mM), lysine (1 mM), and glycerol (20% (v/v) for 30 min before flash freezing in liquid nitrogen

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PDB entries from 2024-10-30

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