6NID
Crystal structure of a human calcium/calmodulin dependent serine protein kinase (CASK) PDZ domain in complex with Neurexin-1 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2015-05-12 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.0003 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.328, 51.177, 72.412 |
Unit cell angles | 90.00, 97.72, 90.00 |
Refinement procedure
Resolution | 41.666 - 1.860 |
R-factor | 0.1942 |
Rwork | 0.192 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nh9 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.673 |
Data reduction software | XDS |
Data scaling software | pointless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.180 | 1.960 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.058 | 0.372 |
Rmeas | 0.081 | 0.519 |
Rpim | 0.056 | 0.361 |
Number of reflections | 21400 | 2574 |
<I/σ(I)> | 13.2 | 2 |
Completeness [%] | 96.1 | 80.4 |
Redundancy | 3.3 | 2.5 |
CC(1/2) | 0.997 | 0.798 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 0.01M tri-sodium citrate 33% (w/v) PEG 6000 |