6NDN
Crystal Structure of Selenocysteine Lyase from Escherichia coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.96863 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 126.520, 126.520, 134.091 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.213 - 1.768 |
R-factor | 0.1605 |
Rwork | 0.160 |
R-free | 0.17270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jf9 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.410 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 92.050 | 92.050 | 1.820 |
High resolution limit [Å] | 1.768 | 7.920 | 1.770 |
Rmerge | 0.160 | 0.050 | 2.354 |
Rpim | 0.032 | 0.010 | 0.482 |
Number of reflections | 106193 | 1374 | 7721 |
<I/σ(I)> | 11 | 33.7 | 1 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 25.8 | 23.4 | 24.7 |
CC(1/2) | 0.999 | 0.999 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 4M Sodium formate |