6NDE
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH PRASEDYMIUM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-06-27 |
Detector | RIGAKU |
Wavelength(s) | 1.54 |
Spacegroup name | P 41 |
Unit cell lengths | 132.351, 132.351, 254.244 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.570 - 3.500 |
R-factor | 0.2941 |
Rwork | 0.290 |
R-free | 0.36860 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5thp |
RMSD bond length | 0.005 |
RMSD bond angle | 1.451 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 132.351 | 48.526 | 3.690 |
High resolution limit [Å] | 3.500 | 11.070 | 3.500 |
Rmerge | 0.042 | 0.478 | |
Rmeas | 0.154 | 0.046 | 0.528 |
Rpim | 0.060 | 0.018 | 0.220 |
Number of reflections | 54903 | 1750 | 7962 |
<I/σ(I)> | 9.4 | 12.6 | 1.4 |
Completeness [%] | 99.9 | 98.5 | 99.5 |
Redundancy | 6.8 | 6.5 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.1 M TRIS, 2.65 M AMMONIUM SULPHATE |