6NDB
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN AND COBALT
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU R-AXIS IV |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-06-27 |
Detector | RIGAKU |
Wavelength(s) | 1.54 |
Spacegroup name | P 41 |
Unit cell lengths | 131.836, 131.836, 251.702 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.070 - 3.200 |
R-factor | 0.2315 |
Rwork | 0.228 |
R-free | 0.29230 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5thp |
RMSD bond length | 0.005 |
RMSD bond angle | 1.391 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 131.836 | 47.029 | 3.370 |
High resolution limit [Å] | 3.200 | 10.120 | 3.200 |
Rmerge | 0.036 | 0.573 | |
Rmeas | 0.148 | 0.039 | 0.624 |
Rpim | 0.059 | 0.016 | 0.246 |
Total number of observations | 436426 | ||
Number of reflections | 70033 | 2217 | 10176 |
<I/σ(I)> | 11.6 | 16.7 | 1.3 |
Completeness [%] | 99.2 | 97.7 | 98.7 |
Redundancy | 6.2 | 5.7 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.1 M TRIS, 2.65 M AMMONIUM SULPHATE |