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6N9R

Structure of the Quorum Quenching lactonase from Parageobacillus caldoxylosilyticus bound to substrate 3-oxo-C12-AHL

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.03333
Spacegroup nameC 1 2 1
Unit cell lengths145.010, 108.590, 78.600
Unit cell angles90.00, 115.75, 90.00
Refinement procedure
Resolution70.800 - 1.750
R-factor0.17894
Rwork0.176
R-free0.23481
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6n9i
RMSD bond length0.002
RMSD bond angle0.595
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.8001.850
High resolution limit [Å]1.7501.750
Rmeas0.0590.480
Number of reflections10951916825
<I/σ(I)>15.213.32
Completeness [%]99.299.5
Redundancy3.984.07
CC(1/2)0.9990.947
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP292Concentrated protein samples 10mg.mL-1, ammonium sulfate 1 to 2.25M, 0.1M sodium acetate. Soaking in 20 mM of C12 AHL for 5 min. Diffraction quality crystals appeared after 1 d at 292 K

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