6N6C
Vibrio cholerae Oligoribonuclease bound to pAA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.977 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 89.375, 89.375, 59.451 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.750 - 1.619 |
R-factor | 0.1466 |
Rwork | 0.146 |
R-free | 0.15460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6n6a |
RMSD bond length | 0.006 |
RMSD bond angle | 0.816 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.148 | 47.148 | 1.710 |
High resolution limit [Å] | 1.619 | 5.120 | 1.620 |
Rmerge | 0.023 | 1.060 | |
Rmeas | 0.049 | 0.024 | 1.110 |
Rpim | 0.014 | 0.007 | 0.326 |
Number of reflections | 35203 | 1210 | 5051 |
<I/σ(I)> | 28.1 | 23.6 | 0.7 |
Completeness [%] | 99.9 | 99.9 | 99.3 |
Redundancy | 12 | 11.4 | 11.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.1 M BisTris (pH 5.5), 17% polyethylene glycol 3350, and 20% xylitol |