6N56
Crystal structure of fumarate reductase, flavo protein subunit, from Helicobacter pylori G27
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-28 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 63.890, 63.890, 354.530 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.464 - 2.350 |
R-factor | 0.1744 |
Rwork | 0.171 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2BS2 as per MoRDa |
RMSD bond length | 0.007 |
RMSD bond angle | 0.814 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.464 | 47.464 | 2.410 |
High resolution limit [Å] | 2.350 | 10.510 | 2.350 |
Rmerge | 0.070 | 0.037 | 0.595 |
Rmeas | 0.073 | 0.040 | 0.619 |
Total number of observations | 386236 | ||
Number of reflections | 31955 | 437 | 2289 |
<I/σ(I)> | 23.75 | 49.66 | 4.77 |
Completeness [%] | 99.4 | 90.3 | 100 |
Redundancy | 12.087 | 8.783 | 12.475 |
CC(1/2) | 0.999 | 0.998 | 0.949 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | 20.9 mg/mL HepyC.18004.a.B1.PS38425 against Molecular dimensions Morpheus screen, D9 (10% PEG20000, 20% PEG550 MME, 20 mM 1,6-hexanediol, 20 mM 1-butanol, 20 mM (RS)-1,2- propanediol 2-propanol, 20 nM 1,4-butanediol, 20 mM 1,3-propanediol, 100 mM Bicine/Trizma base, pH 8.5), direct cryoprotection, tray 300244d9, puck ipi5-8 |