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6N56

Crystal structure of fumarate reductase, flavo protein subunit, from Helicobacter pylori G27

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2018-06-28
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 41 21 2
Unit cell lengths63.890, 63.890, 354.530
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.464 - 2.350
R-factor0.1744
Rwork0.171
R-free0.22240
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2BS2 as per MoRDa
RMSD bond length0.007
RMSD bond angle0.814
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.46447.4642.410
High resolution limit [Å]2.35010.5102.350
Rmerge0.0700.0370.595
Rmeas0.0730.0400.619
Total number of observations386236
Number of reflections319554372289
<I/σ(I)>23.7549.664.77
Completeness [%]99.490.3100
Redundancy12.0878.78312.475
CC(1/2)0.9990.9980.949
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529020.9 mg/mL HepyC.18004.a.B1.PS38425 against Molecular dimensions Morpheus screen, D9 (10% PEG20000, 20% PEG550 MME, 20 mM 1,6-hexanediol, 20 mM 1-butanol, 20 mM (RS)-1,2- propanediol 2-propanol, 20 nM 1,4-butanediol, 20 mM 1,3-propanediol, 100 mM Bicine/Trizma base, pH 8.5), direct cryoprotection, tray 300244d9, puck ipi5-8

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PDB entries from 2024-07-17

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