6N1M
Crystal structure of Fumarate hydratase class II from Legionella pneumophila Philadelphia 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-30 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 58.230, 122.080, 128.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.284 - 1.550 |
R-factor | 0.144 |
Rwork | 0.143 |
R-free | 0.16490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tv2 as per MORDA |
RMSD bond length | 0.009 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((dev_3304)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.284 | 44.284 | 1.590 |
High resolution limit [Å] | 1.550 | 6.930 | 1.550 |
Rmerge | 0.033 | 0.017 | 0.368 |
Rmeas | 0.036 | 0.018 | 0.444 |
Total number of observations | 499400 | ||
Number of reflections | 66283 | 844 | 4373 |
<I/σ(I)> | 32.36 | 110.82 | 3.17 |
Completeness [%] | 99.2 | 99.4 | 89.5 |
Redundancy | 7.534 | 12.897 | 3.033 |
CC(1/2) | 1.000 | 1.000 | 0.840 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 285 | Micolytic MCSG1 screen, D1: 200mM Ammonium sulfate, 25% PEG 3350, 100mM BisTris/HCl pH 6.5: LepnA.01128.a.B1.PS38406 at 17.9mg/ml: cryo: 20% EG: tray 299629d1: puck idj7-6.a |