6MZP
Zebrafish betaglycan orphan domain structure from orthorhombic crystal form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-04 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.9692 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.520, 107.270, 113.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.980 - 2.100 |
R-factor | 0.233 |
Rwork | 0.232 |
R-free | 0.25800 |
Structure solution method | MIRAS |
RMSD bond length | 0.010 |
RMSD bond angle | 1.170 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | SCALA |
Phasing software | SHARP |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.980 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.126 | 2.493 |
Rmeas | 0.137 | 2.719 |
Rpim | 0.053 | 1.069 |
Number of reflections | 45850 | 3715 |
<I/σ(I)> | 14 | 1.3 |
Completeness [%] | 99.9 | 99.6 |
Redundancy | 11.6 | 11.2 |
CC(1/2) | 0.998 | 0.565 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 9.2% v/v PEG 5K mono methyl ether, 4.6% w/v PEG 20K, 0.1M MES pH 6.2 |