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6MYD

Structure of zebrafish TRAF6 in complex with STING CTT

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]80
Detector technologyPIXEL
Collection date2018-03-15
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 1 21 1
Unit cell lengths46.621, 84.377, 53.720
Unit cell angles90.00, 115.42, 90.00
Refinement procedure
Resolution48.520 - 1.399
R-factor0.1812
Rwork0.181
R-free0.19890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1lb5
RMSD bond length0.005
RMSD bond angle0.859
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.5201.420
High resolution limit [Å]1.3991.399
Rpim0.0700.584
Number of reflections73125
<I/σ(I)>4.81.2
Completeness [%]99.094.2
Redundancy3.53.2
CC(1/2)0.9890.495
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.1 M HEPES pH 7.5, 1.5 M LiSO4

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PDB entries from 2024-08-28

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