6MYA
Crystal structure of InvbP.18715.a.KN11: Influenza hemagglutinin from strain A/Almaty/32/1998
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-05 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.650, 244.370, 115.020 |
Unit cell angles | 90.00, 90.09, 90.00 |
Refinement procedure
Resolution | 45.928 - 2.050 |
R-factor | 0.1884 |
Rwork | 0.188 |
R-free | 0.22180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6d8w |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3283) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.928 | 45.928 | 2.100 |
High resolution limit [Å] | 2.050 | 9.170 | 2.050 |
Rmerge | 0.065 | 0.027 | 0.545 |
Rmeas | 0.077 | 0.032 | 0.650 |
Total number of observations | 759013 | ||
Number of reflections | 231107 | 2544 | 17159 |
<I/σ(I)> | 12.59 | 36.46 | 2.36 |
Completeness [%] | 96.5 | 92.5 | 97.2 |
Redundancy | 3.284 | 3.232 | 3.277 |
CC(1/2) | 0.998 | 0.998 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | SEC purified InvbP.18715.a.KN11.PD38330 at 10mg/ml (in 25mM TRIS pH 8, 150mM NaCl) was crystallized by sitting drop vapor diffusion at 14C with an equal volume (0.1:0.1uL) of protein:mother liquor (0.1M MES pH6.5, 15% PEG6000, 5% MPD), then cyoprotected in mother liquor+20% ethylene glycol, before being flash-frozen for data collection. Crystal ID 304576d9 data set jbg0-3 |