6MW4
Structure of pseudoprotease CspC from Clostridioides difficile
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 88.651, 155.176, 91.675 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.837 - 1.550 |
R-factor | 0.166 |
Rwork | 0.164 |
R-free | 0.18640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i0w |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.610 |
High resolution limit [Å] | 1.550 | 3.340 | 1.550 |
Rmerge | 0.056 | 0.031 | 0.595 |
Rmeas | 0.067 | 0.037 | 0.716 |
Rpim | 0.035 | 0.019 | 0.394 |
Total number of observations | 595469 | ||
Number of reflections | 177295 | 17812 | 17407 |
<I/σ(I)> | 5.4 | ||
Completeness [%] | 99.6 | 99.9 | 97.7 |
Redundancy | 3.4 | 3.5 | 3.1 |
CC(1/2) | 0.998 | 0.749 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294 | 0.2M MES pH 6.5 with 2.5 M ammonium chloride and 0.5 M guanidinium hydrochloride mixed equal volume with 22 mg/ml protein and equilibrated over 2M sodium chloride |