6MVS
Structure of a bacterial ALDH16 complexed with NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 79.046, 158.970, 62.440 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.779 - 1.650 |
R-factor | 0.1701 |
Rwork | 0.169 |
R-free | 0.20000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | homology model built with Swiss-Model using 5kf6 as the template |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 79.480 | 1.680 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.117 | 0.757 |
Rmeas | 0.129 | 0.950 |
Rpim | 0.052 | 0.564 |
Number of reflections | 92182 | 3411 |
<I/σ(I)> | 10 | |
Completeness [%] | 96.8 | 73.7 |
Redundancy | 6 | 2.3 |
CC(1/2) | 0.993 | 0.471 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | Protein was concentrated to 6 mg/ml in a storage buffer consisting of 20 mM Tris-HCl at pH 8.0, 100 mM NaCl, 2.5% glycerol and 0.5 mM TCEP. The crystallization reservoir solution contained 20% (w/v) polyethylene glycol (PEG) 3350, 200 mM ammonium sulfate and 100 mM Bis-Tris at pH 5.5. |