6MT2
Crystal structure of Inorganic Pyrophosphatase from Medicago truncatula (I23 crystal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-11 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | I 2 3 |
Unit cell lengths | 235.202, 235.202, 235.202 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.010 - 2.890 |
R-factor | 0.17278 |
Rwork | 0.172 |
R-free | 0.19529 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lug |
RMSD bond length | 0.010 |
RMSD bond angle | 1.460 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.070 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.140 | 1.700 |
Rmeas | 0.140 | 1.800 |
Number of reflections | 48141 | 7620 |
<I/σ(I)> | 23.4 | 1.9 |
Completeness [%] | 99.7 | 98.2 |
Redundancy | 16 | 15 |
CC(1/2) | 1.000 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 292 | 4% Tacsimate pH 6.0, 12% PEG 3350 crystal after 3 months 20% Ethylene glycol as cryoprotectant MtPPA1 at 16.3 mg/ml |