6MSW
Crystal structure of BH1352 2-deoxyribose-5-phosphate from Bacillus halodurans, K184L mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2017-10-23 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 240.779, 55.125, 176.297 |
Unit cell angles | 90.00, 127.71, 90.00 |
Refinement procedure
Resolution | 29.976 - 2.169 |
R-factor | 0.193 |
Rwork | 0.193 |
R-free | 0.21090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6d33 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.618 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.210 |
High resolution limit [Å] | 2.169 | 2.170 |
Rmerge | 0.077 | 0.734 |
Rpim | 0.042 | 0.405 |
Number of reflections | 97428 | 4866 |
<I/σ(I)> | 17.75 | 2.11 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4.2 | 4.2 |
CC(1/2) | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 20% PEG3350, 0.2 M magnesium chloride, 0.1 M Bis-Tris pH 5.5, 10 mM acetaldehyde |