6MS1
Crystal structure of the human Scribble PDZ1 domain bound to the PDZ-binding motif of APC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.91840 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 62.338, 51.102, 57.051 |
Unit cell angles | 90.00, 92.69, 90.00 |
Refinement procedure
Resolution | 39.503 - 1.350 |
R-factor | 0.1788 |
Rwork | 0.178 |
R-free | 0.20350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vwk |
RMSD bond length | 0.005 |
RMSD bond angle | 0.673 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.503 | 1.370 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.072 | 0.448 |
Rmeas | 0.087 | 0.606 |
Rpim | 0.039 | 0.284 |
Number of reflections | 38341 | 1786 |
<I/σ(I)> | 7 | 1.5 |
Completeness [%] | 97.5 | 91.3 |
Redundancy | 4.6 | 4.1 |
CC(1/2) | 0.996 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.2M Potassium formate, 20% PEG 3350 |