6MR7
DNA polymerase beta substrate complex with templating adenine and incoming Fapy-dGTP analog
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-10 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.032, 79.825, 55.518 |
Unit cell angles | 90.00, 110.60, 90.00 |
Refinement procedure
Resolution | 24.711 - 2.144 |
R-factor | 0.1909 |
Rwork | 0.186 |
R-free | 0.25160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3isb |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.190 |
High resolution limit [Å] | 2.150 | 5.810 | 2.150 |
Rmerge | 0.075 | 0.047 | 0.415 |
Rmeas | 0.091 | 0.058 | 0.507 |
Rpim | 0.051 | 0.033 | 0.287 |
Total number of observations | 72772 | ||
Number of reflections | 24393 | 1270 | 1181 |
<I/σ(I)> | 9.5 | ||
Completeness [%] | 99.1 | 99.4 | 97.9 |
Redundancy | 3 | 2.7 | 2.8 |
CC(1/2) | 0.995 | 0.808 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 50 mM imidazole pH 7.5, 16% PEG3350, and 350 mM sodium acetate |