6MQK
Crystal Structure of GTPase Domain of Human Septin 12 in complex with GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | P 1 |
Unit cell lengths | 46.960, 69.250, 88.230 |
Unit cell angles | 75.45, 89.46, 76.43 |
Refinement procedure
Resolution | 45.586 - 2.190 |
R-factor | 0.1865 |
Rwork | 0.184 |
R-free | 0.22860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mq9 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.798 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.590 | 2.250 |
High resolution limit [Å] | 2.190 | 2.190 |
Rmerge | 0.108 | |
Rpim | 0.068 | 0.607 |
Number of reflections | 52030 | 3910 |
<I/σ(I)> | 6.9 | 1.3 |
Completeness [%] | 96.7 | 96.3 |
Redundancy | 3.4 | 3.5 |
CC(1/2) | 0.995 | 0.562 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD, 0.1 M bicine/Trizma base pH 8.5, 30mM magnesium chloride, 30mM calcium chloride |