6MNO
6235 TCR bound to I-Ab Padi4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-01 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97936 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 250.057, 69.030, 64.687 |
Unit cell angles | 90.00, 91.51, 90.00 |
Refinement procedure
Resolution | 29.669 - 2.900 |
R-factor | 0.2199 |
Rwork | 0.215 |
R-free | 0.27020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mkd |
RMSD bond length | 0.011 |
RMSD bond angle | 0.890 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.670 | 3.080 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.154 | 0.727 |
Rmeas | 0.175 | 0.819 |
Rpim | 0.081 | 0.372 |
Total number of observations | 110563 | |
Number of reflections | 24697 | 3978 |
<I/σ(I)> | 6.8 | |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 4.5 | 4.7 |
CC(1/2) | 0.990 | 0.786 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 298 | 12% PEG 4000, 100mM NaCacodylate, 100 mM NaCitrate |