6MK6
Carbapenemase VCC-1 from Vibrio cholerae N14-02106
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-01 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 209.930, 46.650, 113.610 |
Unit cell angles | 90.00, 99.28, 90.00 |
Refinement procedure
Resolution | 51.796 - 1.700 |
R-factor | 0.1645 |
Rwork | 0.164 |
R-free | 0.20110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bue |
RMSD bond length | 0.009 |
RMSD bond angle | 0.974 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13rc2_2986: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.060 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.052 | 0.303 |
Number of reflections | 119395 | |
<I/σ(I)> | 13.8 | |
Completeness [%] | 99.5 | |
Redundancy | 4.6 | |
CC(1/2) | 0.999 | 0.970 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.7 M NaCl, 0.2 M Bis-Tris pH 5.5 and 22% PEG 3350 and 12-18 mg/mL VCC-1 |