6MH2
Structure of Herceptin Fab without antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 1 |
Unit cell lengths | 37.990, 78.890, 85.140 |
Unit cell angles | 113.59, 92.78, 101.68 |
Refinement procedure
Resolution | 42.080 - 2.800 |
R-factor | 0.2538 |
Rwork | 0.251 |
R-free | 0.30620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n8z |
RMSD bond length | 0.010 |
RMSD bond angle | 1.625 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.26) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.610 | 43.610 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.115 | 0.061 | 0.385 |
Rmeas | 0.137 | 0.072 | 0.455 |
Rpim | 0.073 | 0.038 | 0.240 |
Total number of observations | 66134 | 2215 | 10087 |
Number of reflections | 19572 | 640 | 2952 |
<I/σ(I)> | 7.3 | 13.7 | 2.5 |
Completeness [%] | 90.5 | 93.6 | 92.5 |
Redundancy | 3.4 | 3.5 | 3.4 |
CC(1/2) | 0.977 | 0.993 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 200 mM ammonium acetate, 100 mM Bis-Tris, pH 5.5, 25% v/v PEG3350 |