6MEN
Crystal structure of a Tylonycteris bat coronavirus HKU4 macrodomain in complex with adenosine diphosphate glucose (ADP-glucose)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-02 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 33.548, 41.691, 60.001 |
Unit cell angles | 73.04, 88.37, 88.05 |
Refinement procedure
Resolution | 29.210 - 1.500 |
R-factor | 0.1747 |
Rwork | 0.173 |
R-free | 0.20860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mea |
RMSD bond length | 0.006 |
RMSD bond angle | 1.683 |
Data reduction software | XDS (Version Nov. 1, 2016) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.860 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.129 | 1.284 |
Rmeas | 0.139 | 1.382 |
Rpim | 0.051 | 0.508 |
Total number of observations | 371270 | |
Number of reflections | 49739 | 2476 |
<I/σ(I)> | 9.1 | 1.9 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.5 | 7.4 |
CC(1/2) | 0.995 | 0.721 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 20-25% PEG3350, 0.1 M HEPES, pH 7.0-7.5, protein:ligand molar ratio 1:10 |