6MC6
Crystal structure of PprA filament from Deinococcus radiodurans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97928 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 56.780, 90.950, 121.110 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 51.410 - 2.747 |
R-factor | 0.2136 |
Rwork | 0.211 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bdu |
RMSD bond length | 0.005 |
RMSD bond angle | 0.657 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER (1.13-2998) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.950 | 2.880 |
High resolution limit [Å] | 2.747 | 2.750 |
Rmerge | 0.190 | |
Rmeas | 0.217 | |
Rpim | 0.103 | |
Number of reflections | 16992 | 2181 |
<I/σ(I)> | 7.3 | 1.9 |
Completeness [%] | 99.7 | 98.9 |
Redundancy | 7.8 | 8 |
CC(1/2) | 0.994 | 0.355 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293.15 | Protein at 4.5 mg/mL in 150 mM KCl, 20 mM Tris, pH 7.5 was mixed in 1:1 volume ratio with Wizard Classic 1 (Rigaku) #46 - a solution of 200 mM Lithium sulfate, 10% (w/v) PEG 8000 and 100 mM Imidazole/ HCl at pH 8.0. The drop was suspended over a 1.5M Ammonium sulfate dehydrating solution and incubated for about 5 weeks. |