6MB9
Ternary (neomycin/CoA) structure of AAC-IIIb
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 1 |
Unit cell lengths | 66.043, 69.168, 69.837 |
Unit cell angles | 88.80, 64.36, 80.53 |
Refinement procedure
Resolution | 48.800 - 2.500 |
R-factor | 0.2001 |
Rwork | 0.199 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bc3 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.079 | 0.038 | 0.323 |
Rmeas | 0.108 | 0.050 | 0.440 |
Rpim | 0.073 | 0.033 | 0.298 |
Total number of observations | 72266 | ||
Number of reflections | 37666 | 3826 | 3710 |
<I/σ(I)> | 4.9 | ||
Completeness [%] | 97.7 | 99 | 96.5 |
Redundancy | 1.9 | 2 | 1.8 |
CC(1/2) | 0.996 | 0.798 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 14-22% PEG 3350 and 0.1-0.4M sodium thiocyanate |