6M7Z
A divergent kinase lacking the glycine-rich loop regulates membrane ultrastructure of the Toxoplasma parasitophorous vacuole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.038 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 171.466, 123.068, 86.615 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.700 - 2.500 |
R-factor | 0.1993 |
Rwork | 0.197 |
R-free | 0.23877 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.244 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHELXDE |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.780 | 2.500 |
Rmerge | 0.088 | 0.046 | 0.855 |
Rmeas | 0.095 | 0.049 | 0.925 |
Rpim | 0.034 | 0.018 | 0.345 |
Total number of observations | 512518 | ||
Number of reflections | 64181 | 3431 | 3158 |
<I/σ(I)> | 9.5 | ||
Completeness [%] | 99.9 | 99 | 99.8 |
Redundancy | 8 | 7.4 | 7.3 |
CC(1/2) | 0.997 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.4 | 298 | 0.2M Proline, 0.1M HEPES 7.4, 10% PEG-3350 |