Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6M4K

X-ray crystal structure of wild type alpha-amylase I from Eisenia fetida

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-11
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.98
Spacegroup nameP 32 2 1
Unit cell lengths96.245, 96.245, 121.980
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.220 - 1.300
R-factor0.167933873213
Rwork0.167
R-free0.18327
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1kxq
RMSD bond length0.005
RMSD bond angle0.856
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.2201.320
High resolution limit [Å]1.3001.300
Rmerge0.0500.858
Rmeas0.0560.965
Number of reflections1601917805
<I/σ(I)>20.22.6
Completeness [%]100.0100
Redundancy9.99.4
CC(1/2)0.9990.847
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52931.3 M lithium sulfate, 3% (v/v) PEG 400, 0.1 M magnesium chloride, 0.1 M sodium acetate

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon