6M2G
Sirohydrochlorin nickelochelatase CfbA in complex with cobalt-sirohydrochlorin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.60578 |
Spacegroup name | P 41 |
Unit cell lengths | 69.180, 69.180, 81.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.920 - 2.800 |
R-factor | 0.1866 |
Rwork | 0.184 |
R-free | 0.22360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xws |
RMSD bond length | 0.012 |
RMSD bond angle | 2.346 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.920 | 48.920 | 2.900 |
High resolution limit [Å] | 2.800 | 10.000 | 2.800 |
Rmerge | 0.063 | 0.030 | 0.820 |
Rmeas | 0.068 | 0.032 | 0.886 |
Total number of observations | 129299 | ||
Number of reflections | 9563 | 404 | 1856 |
<I/σ(I)> | 20.28 | 51.21 | 2.56 |
Completeness [%] | 99.9 | 99 | 100 |
Redundancy | 6.934 | 7.349 | 7.052 |
CC(1/2) | 0.999 | 0.999 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.1M ammonium sulfate, 0.3M Na-formate, 0.1M Na-acetate, 3% (w/v) gamma-PGA, 5% (w/v) PEG 3350 |