6M29
Sirohydrochlorin nickelochelatase CfbA in complex with Co2+ and formate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.60581 |
Spacegroup name | P 41 |
Unit cell lengths | 68.360, 68.360, 82.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.340 - 2.900 |
R-factor | 0.1998 |
Rwork | 0.198 |
R-free | 0.24330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xws |
RMSD bond length | 0.008 |
RMSD bond angle | 1.683 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.340 | 48.340 | 3.000 |
High resolution limit [Å] | 2.900 | 10.000 | 2.900 |
Rmerge | 0.074 | 0.034 | 0.930 |
Rmeas | 0.084 | 0.040 | 1.053 |
Total number of observations | 36522 | ||
Number of reflections | 8427 | 216 | 823 |
<I/σ(I)> | 11.13 | 26.47 | 1.34 |
Completeness [%] | 99.2 | 97.7 | 100 |
Redundancy | 4.334 | 3.986 | 4.543 |
CC(1/2) | 0.998 | 0.996 | 0.658 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 293 | 0.1M ammonium sulfate, 0.3M Na-formate, 0.1M Tris, 3% (w/v) gamma-PGA, 5% (w/v) PEG 3350 |