6M28
Sirohydrochlorin nickelochelatase CfbA in complex with Co2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.74074 |
Spacegroup name | P 41 |
Unit cell lengths | 68.060, 68.060, 82.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.170 - 3.000 |
R-factor | 0.1864 |
Rwork | 0.184 |
R-free | 0.23740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xws |
RMSD bond length | 0.006 |
RMSD bond angle | 1.611 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.170 | 48.170 | 3.100 |
High resolution limit [Å] | 3.000 | 10.000 | 3.000 |
Rmerge | 0.072 | 0.033 | 0.930 |
Rmeas | 0.073 | 0.033 | 0.951 |
Total number of observations | 201439 | ||
Number of reflections | 7545 | 216 | 671 |
<I/σ(I)> | 34.5 | 88.13 | 3.82 |
Completeness [%] | 99.7 | 98.6 | 97 |
Redundancy | 26.698 | 24.829 | 22.854 |
CC(1/2) | 1.000 | 1.000 | 0.876 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2M L-arginine, 0.1M MES, 8% (w/v) gamma-PGA |