6M24
Uncommon structural features of rabbit MHC class I (RLA-A1) complexed with rabbit haemorrhagic disease virus (RHDV) derived peptide, VP60-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2019-07-10 |
Detector | SDMS |
Wavelength(s) | 1.03853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.578, 76.218, 155.081 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.390 - 2.290 |
R-factor | 0.1968 |
Rwork | 0.194 |
R-free | 0.24630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5deg |
RMSD bond length | 0.008 |
RMSD bond angle | 0.893 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | CNS |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.200 | 2.300 |
Rmerge | 0.101 | 0.857 |
Number of reflections | 27014 | 27014 |
<I/σ(I)> | 2.75 | |
Completeness [%] | 99.9 | |
Redundancy | 12.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 0.2M magnesium chloride hexahydrate, 0.1M sodium citrate tribasic, pH 5.0, 10% w/v polyethylene glycol 20000 |