6LPM
Crystal structure of AP endonuclease from Deinococcus radioduran
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-04-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 57.420, 58.860, 74.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.430 - 1.500 |
R-factor | 0.1871 |
Rwork | 0.186 |
R-free | 0.20440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2j5c |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.430 | 29.430 | 1.530 |
High resolution limit [Å] | 1.495 | 6.690 | 1.500 |
Rmerge | 0.066 | 0.055 | 0.473 |
Rmeas | 0.074 | 0.062 | 0.561 |
Number of reflections | 40705 | 523 | 2760 |
<I/σ(I)> | 14.65 | 23.07 | 4.34 |
Completeness [%] | 98.2 | 96.9 | 91 |
Redundancy | 5.094 | 4.671 | 3.446 |
CC(1/2) | 0.997 | 0.991 | 0.853 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | Bis-Tris, PEG 5000 |