6LPA
The nsp1 protein of a new porcine coronavirus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | EUROPEAN XFEL BEAMLINE FXE |
Synchrotron site | European XFEL |
Beamline | FXE |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2019-06-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.831, 60.371, 84.005 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.188 - 2.105 |
R-factor | 0.2363 |
Rwork | 0.235 |
R-free | 0.25290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xbc |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 4.520 | 2.180 |
High resolution limit [Å] | 2.100 | 3.590 | 2.100 |
Rmerge | 0.091 | 0.076 | 0.947 |
Rmeas | 0.095 | 0.079 | 0.985 |
Rpim | 0.026 | 0.022 | 0.268 |
Total number of observations | 216291 | ||
Number of reflections | 16746 | 1712 | 1641 |
<I/σ(I)> | 4.6 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 12.9 | 13 | 13.2 |
CC(1/2) | 0.998 | 0.840 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | PEG 3350, ammonium citrate dibasic |