6LOP
Crystal Structure of Class IB terpene synthase bound with geranylgeraniol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-06-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 50.964, 53.403, 76.349 |
Unit cell angles | 94.64, 104.63, 113.45 |
Refinement procedure
Resolution | 47.960 - 1.910 |
R-factor | 0.1633 |
Rwork | 0.161 |
R-free | 0.20220 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6loo |
RMSD bond length | 0.004 |
RMSD bond angle | 1.238 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.010 | 47.960 | 1.950 |
High resolution limit [Å] | 1.910 | 8.960 | 1.910 |
Rmerge | 0.050 | 0.025 | 0.540 |
Rmeas | 0.059 | 0.029 | 0.640 |
Rpim | 0.031 | 0.015 | 0.338 |
Number of reflections | 52514 | 516 | 3479 |
<I/σ(I)> | 10 | ||
Completeness [%] | 96.8 | 98.7 | 95.5 |
Redundancy | 3.4 | 3.6 | 3.5 |
CC(1/2) | 0.999 | 0.999 | 0.737 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8.3 | 298 | PEG3350, Ammonium Acetate, Magnesium Chloride, Methanol |