6LMQ
Crystal structure of HIV-1 integrase catalytic core domain in complex with 2-(tert-butoxy)-2-[3-(3,4-dihydro-2H-1,4-benzoxazin-6-yl)-6-methanesulfonamido-2,3',4',5-tetramethyl-[1,1'-biphenyl]-4-yl]acetic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-07-02 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 71.885, 71.885, 65.520 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 62.250 - 2.100 |
R-factor | 0.2132 |
Rwork | 0.212 |
R-free | 0.23950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lpt |
RMSD bond length | 0.026 |
RMSD bond angle | 2.111 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP (10.2.31) |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.250 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.064 | 0.029 | 0.544 |
Number of reflections | 11752 | 618 | 580 |
<I/σ(I)> | 13.7 | ||
Completeness [%] | 99.5 | 94.2 | 99.8 |
Redundancy | 5.1 | 4.9 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.1M Sodium cacodylate pH6.5, 0.206M Ammonium sulfate, 1% PEG 8000, 5mM DTT |